by Katja ~ July 18, 2008
Here is an example page using this cURL code: basically scrapes the return from a services XML response document for id tags and builds the urls to embed images and link back to those records. Here is the services page.
<?php
//basic for scaping a page in morphbank; using cURL instead of how first written with file_get_contents()
$ch = curl_init();
$timeout = 5; // set to zero for no timeout
curl_setopt ($ch, CURLOPT_URL, 'http://services.morphbank.net/mb2/request?method=xml&keywords=Alysiinae+Whole+Body&objecttype=Image&limit=10&firstResult=0&format=id');
curl_setopt ($ch, CURLOPT_RETURNTRANSFER, 1);
curl_setopt ($ch, CURLOPT_CONNECTTIMEOUT, $timeout);
$data = curl_exec($ch);
//curl_close($ch);$regex = "/\<objectid\>(.*?)\<\/objectid\>/";
curl_close($ch);$regex = "/\<id\>(.*?)\<\/id\>/";
preg_match_all ($regex,$data,$match);
foreach($match[1] as $matchId ){
echo '<a href="http://morphbank.net/?id='.$matchId.'"><img src="http://morphbank.net/?id='.$matchId.'&imgType=jpg" /></a>' ;
}
?>
by dpaul ~ March 28, 2008
Agenda - Morphbank Usability Workshop and Study, May 1 - 2, 2008
Thursday, May 1, 2008
1030 - 1100 Informal Gathering at the Double Tree Hotel - The Salons A & B, Downstairs, Lobby Level
Name Tags, Workshop Folders with Informed Consent & Initial Morphbank User Survey Questionnaire
1115 - 1215 Welcome Lunch: Double Tree Hotel - The Salons A & B
1215 - 1230 Double Tree shuttle and FSU shuttle to FSU
Pickup Location: Double Tree main lobby, front entrance
Destination: Florida State University
School of Computational Science, Dirac Science Library, 1st floor, DSL 152
100 - 500 FSU, School of Computational Science, classroom DSL 152
100 - 115 Welcoming remarks
Greg Riccardi, PI of the Morphbank Project
115 - 215 Introduction to Morphbank
Explain the Method and Scope of the Usability Workshop/Study
Katja Seltmann & Debbie Paul
Study Participants - Informed Consent (collect them and take questions)
Usability Study - Introductory Survey (all participants will fill this out)
Online walk through Morphank (ppt Presentation) by Katja and Deb …
215 - 330 First Usability Session
Scenarios may be: Login to Morphbank, Access Account Information, Upload a Logo, Search via Keyword & Limit…
330-345 Break - Drinks provided
345 - 500 Continue with Morphbank Usability Scenarios
500 - 515 FSU Shuttle & Cars to MacClay Gardens Tour
530 - 630 MacClay Gardens Tour
630 - 900 Dinner - Morelia’s Mexican Restaurant
900 Double Tree van and FSU van back to the Double Tree
Friday, May 2, 2008
730 - 830 Breakfast at the Double Tree Hotel or downtown location of your choice
830 - 845 Double Tree shuttle and FSU shuttle to FSU
Pickup Location:Double Tree main lobby, front entrance
Destination: Florida State University
School of Computational Science, Dirac Science Library, 1st floor, DSL 152
900 - 1200 Morphbank Usability Workshop and Study continues
900 - 1030 Continuation of where ever each person left off the day before.
1030 - 1045 Break, Drinks provided.
1045 - 1200 Continuation usability scenarios.
1200 - 100 Lunch. Hopkins Eatery delivers. Lunch in the Commons Area or outside if weather permits.
115 - 230 Hands-on use of Morphbank software continues…some small group discussions.
230 - 250 Break, Drinks provided.
250 - 500 End of Hands-on software use.
Gather Feedback.
Conduct Usability Study Exit Interview/Surveys.
Discuss plans for upload of larger datasets & Morphbank Future (Greg).
Some Usability Participants here on Saturday to work one-on-one with developers - discuss plans briefly.
500 - FSU Van and Cars to Hotel - Return to the Double Tree via Van and cars.
Dinner on your own - Consult the Restaurant List or Ask a Native 
First Friday in Railroad Square for anyone interested in attending. Van transportation provided. Pick up between 630 - 645 at the hotel.
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Agenda - Morphbank Ontology Workshop, May 3 - 4, 2008
Saturday, May 3, 2008
800 - 900 Breakfast at the Hotel or at a nearby establishment of your choice.
900 - 915 Double Tree shuttle and FSU shuttle to FSU
Pickup Location: Double Tree main lobby, front entrance
Destination: School of Computational Science (SCS),
Dirac Science Library Building, 4th Floor
930 - 945 Welcome and Introduction, Greg Riccardi, Austin Mast, Andy Deans, Morphbank
Overview & Scope of the 2-day Workshop
945 - 1045 5-Minute Group Presentations. Participants share the progress from their unique projects while highlighting the issues related to Ontology.
1045 - 1100 Break. 4th Floor Dirac Commons Area. Drink/snacks provided.
1100 - 1230 Discussion 2
1230 - 130 Lunch. 4th Floor Dirac Commons Area.
130 - 300 Discussion 3
300 - 315 Break. Snack/Drinks.
315 - 430 Small groups.
430 - 500 Regather to summarize and plan for Sunday.
500 - 515 Double Tree shuttle and FSU shuttle to the Double Tree Hotel
610 - 620 Shuttle to dinner, pick up FSU shuttle at Lobby Entrance
630 - Dinner is at 2 Chez
Sunday, May 4, 2008
800 - 900 Breakfast at the Hotel or at the downtown location of your choice.
900 - 915 Double Tree shuttle and FSU shuttle to FSU
Pickup Location: Double Tree main lobby, front entrance
Destination: School of Computational Science (SCS),
Dirac Science Library Building, 4th Floor
930 - 945 Welcome and Refocus…Greg Riccardi…
Overview & Scope of the 2nd day of the Workshop
945 - 1045 Discussion 1
1045 - 1100 Break. 4th Floor Dirac Commons Area. Drink/snacks provided.
1100 - 1230 Discussion 2
1230 - 130 Lunch. 4th Floor Dirac Commons Area.
130 - 300 Discussion 3
300 - 315 Break. Drink/snacks provided.
315 - 430 Small group discussion.
430 - 500 Re-gather to summarize and make next plans based on Workshop findings
500 - 515 Double Tree shuttle and FSU shuttle to the Double Tree Hotel
by dpaul ~ February 26, 2008
See the Agenda for the schedule and topics for the Morphbank Usability Workshop, May 1 - 4. The workshop has been extended to include Sunday May 4th. In addition to a Usability Session (Intro to Morphbank and Hands-on time with the software), new sections will cover Ontologies, using XML to Upload and Update data, and Views.
Schedule (subject to revision)
April 30th (or early May 1st) : Arrival
May 1st - 2nd: Usability Workshop & Usability Study
May 3rd - 4th: Ontology Workshop
Note: Some attendees are participating in both Workshops. Some participants from the Usability Workshop will continue on May 3rd working with their own datasets & Morphbank developers.
Note: Those participating in the Usability Study will need to sign a consent form. It’s been sent to participants via email and will be posted here shortly.
